Variant report

Variant	rs11963434
Chromosome Location	chr6:37076486-37076487
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37071806..37074553-chr6:37075851..37078710,2	MCF-7	breast:
2	chr6:37074778..37077520-chr6:37077678..37080742,3	K562	blood:
3	chr6:37035193..37037363-chr6:37076365..37078969,2	K562	blood:
4	chr6:37071276..37073257-chr6:37076145..37078441,2	K562	blood:
5	chr6:37061973..37063628-chr6:37076355..37078503,2	K562	blood:
6	chr6:37075244..37076865-chr6:37096674..37098179,2	K562	blood:
7	chr6:37073303..37075994-chr6:37076080..37077864,2	MCF-7	breast:
8	chr6:37074778..37076702-chr6:37077678..37080276,2	K562	blood:

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57829610	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6899597	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6909028	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6909035	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6939828	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730528	0.81[AFR][1000 genomes]
rs73730529	0.84[AFR][1000 genomes]
rs7762432	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7771734	1.00[EUR][1000 genomes]
rs9470485	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37071400-37077800	Weak transcription	Fetal Lung	lung
2	chr6:37071400-37081800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:37071600-37077400	Weak transcription	Left Ventricle	heart
4	chr6:37071800-37077400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:37071800-37077600	Weak transcription	Right Atrium	heart
6	chr6:37071800-37079200	Enhancers	Fetal Intestine Small	intestine
7	chr6:37071800-37080200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:37072400-37077400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:37072400-37077600	Weak transcription	Fetal Heart	heart
10	chr6:37072600-37077600	Weak transcription	Fetal Stomach	stomach
11	chr6:37072800-37077400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:37072800-37077600	Weak transcription	Gastric	stomach
13	chr6:37073000-37077600	Weak transcription	A549	lung
14	chr6:37073200-37078000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:37073400-37077000	Weak transcription	Ovary	ovary
16	chr6:37073400-37077400	Weak transcription	Hela-S3	cervix
17	chr6:37073400-37077800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:37073600-37077000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:37073600-37077200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:37073600-37077200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:37073600-37077200	Weak transcription	Pancreas	Pancrea
22	chr6:37073600-37077400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:37073600-37077400	Weak transcription	Adipose Nuclei	Adipose
24	chr6:37073600-37077600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:37073600-37077600	Weak transcription	GM12878-XiMat	blood
26	chr6:37073600-37077800	Weak transcription	Fetal Kidney	kidney
27	chr6:37073600-37078200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:37073600-37082000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr6:37073600-37090600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:37073800-37077200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr6:37073800-37077600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:37073800-37083000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:37074400-37077400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:37075200-37077200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr6:37075200-37077200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:37075200-37077200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:37075200-37077200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:37075200-37077200	Weak transcription	Fetal Muscle Leg	muscle
39	chr6:37075200-37077200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:37075200-37077200	Weak transcription	Stomach Mucosa	stomach
41	chr6:37075200-37077400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:37075200-37077600	Weak transcription	Lung	lung
43	chr6:37075200-37091000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:37075400-37076800	Weak transcription	Fetal Intestine Large	intestine
45	chr6:37075400-37077000	Weak transcription	Placenta	Placenta
46	chr6:37075400-37077400	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr6:37075400-37077400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr6:37075400-37077400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr6:37075400-37077400	Enhancers	HepG2	liver
50	chr6:37075400-37077400	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links