Variant report

Variant	rs6939828
Chromosome Location	chr6:37079711-37079712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37074778..37077520-chr6:37077678..37080742,3	K562	blood:
2	chr6:37076824..37080028-chr6:37133867..37138322,4	K562	blood:
3	chr6:37074778..37076702-chr6:37077678..37080276,2	K562	blood:
4	chr6:37070631..37074042-chr6:37078630..37081482,4	K562	blood:
5	chr6:37078466..37081353-chr6:37086444..37088637,2	K562	blood:

Variant related genes	Relation type
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11963434	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57829610	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6899597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6909028	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6909035	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6929632	0.85[AFR][1000 genomes]
rs73730528	0.82[AFR][1000 genomes]
rs73730529	0.91[AFR][1000 genomes]
rs7762432	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7771734	1.00[EUR][1000 genomes]
rs9470485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37071400-37081800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:37071800-37080200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:37073600-37082000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:37073600-37090600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:37073800-37083000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:37075200-37091000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:37075400-37081600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:37077200-37080200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:37077200-37080200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:37077200-37080400	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:37077200-37080600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:37077200-37081000	Strong transcription	H9 Cell Line	embryonic stem cell
13	chr6:37077400-37080200	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr6:37077600-37082000	Weak transcription	Pancreas	Pancrea
15	chr6:37078200-37082600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:37078200-37082600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:37078600-37084200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:37078800-37079800	Enhancers	K562	blood
19	chr6:37078800-37082400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:37078800-37083000	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:37079000-37080400	Enhancers	HepG2	liver
22	chr6:37079000-37085200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:37079000-37092400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:37079200-37082800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:37079200-37083000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:37079200-37083000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:37079200-37083000	Weak transcription	Ovary	ovary
28	chr6:37079200-37092600	Weak transcription	Fetal Intestine Small	intestine
29	chr6:37079400-37087400	Weak transcription	Placenta	Placenta

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