Variant report

Variant	rs6909028
Chromosome Location	chr6:37074518-37074519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37071806..37074553-chr6:37075851..37078710,2	MCF-7	breast:
2	chr6:37073648..37076297-chr6:37105144..37107606,2	MCF-7	breast:
3	chr6:37073303..37075994-chr6:37076080..37077864,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11963434	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57829610	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6899597	0.94[AFR][1000 genomes]
rs6909035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6929632	0.91[AFR][1000 genomes]
rs6939828	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73730528	0.88[AFR][1000 genomes]
rs73730529	0.85[AFR][1000 genomes]
rs7762432	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7771734	1.00[EUR][1000 genomes]
rs9470485	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37070800-37075400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr6:37071200-37074800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:37071200-37075200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:37071200-37075400	Enhancers	Fetal Intestine Large	intestine
5	chr6:37071200-37075400	Enhancers	Placenta	Placenta
6	chr6:37071400-37074600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:37071400-37074800	Weak transcription	Right Ventricle	heart
8	chr6:37071400-37077800	Weak transcription	Fetal Lung	lung
9	chr6:37071400-37081800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:37071600-37077400	Weak transcription	Left Ventricle	heart
11	chr6:37071800-37074600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:37071800-37074600	Weak transcription	Dnd41	blood
13	chr6:37071800-37074600	Enhancers	K562	blood
14	chr6:37071800-37074800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:37071800-37077400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:37071800-37077600	Weak transcription	Right Atrium	heart
17	chr6:37071800-37079200	Enhancers	Fetal Intestine Small	intestine
18	chr6:37071800-37080200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr6:37072000-37074800	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr6:37072000-37074800	Weak transcription	HUVEC	blood vessel
21	chr6:37072400-37075000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:37072400-37077400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr6:37072400-37077600	Weak transcription	Fetal Heart	heart
24	chr6:37072600-37074800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr6:37072600-37077600	Weak transcription	Fetal Stomach	stomach
26	chr6:37072800-37074800	Weak transcription	Lung	lung
27	chr6:37072800-37077400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:37072800-37077600	Weak transcription	Gastric	stomach
29	chr6:37073000-37077600	Weak transcription	A549	lung
30	chr6:37073200-37078000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:37073400-37074600	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr6:37073400-37074800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:37073400-37077000	Weak transcription	Ovary	ovary
34	chr6:37073400-37077400	Weak transcription	Hela-S3	cervix
35	chr6:37073400-37077800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr6:37073600-37074600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr6:37073600-37074800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:37073600-37074800	Weak transcription	Spleen	Spleen
39	chr6:37073600-37075200	Enhancers	Primary T cells from cord blood	blood
40	chr6:37073600-37077000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr6:37073600-37077200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:37073600-37077200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:37073600-37077200	Weak transcription	Pancreas	Pancrea
44	chr6:37073600-37077400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:37073600-37077400	Weak transcription	Adipose Nuclei	Adipose
46	chr6:37073600-37077600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:37073600-37077600	Weak transcription	GM12878-XiMat	blood
48	chr6:37073600-37077800	Weak transcription	Fetal Kidney	kidney
49	chr6:37073600-37078200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr6:37073600-37082000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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