Variant report

Variant	rs11963970
Chromosome Location	chr6:132110882-132110883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11964839	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11967363	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13211931	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs13212870	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13216477	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13218588	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13218939	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34252573	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34263163	0.96[EUR][1000 genomes]
rs35293576	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35845539	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs36030138	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56322825	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6569757	0.92[EUR][1000 genomes]
rs66714711	0.85[EUR][1000 genomes]
rs66885292	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7765331	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv886670	chr6:132071193-132193395	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv886671	chr6:132071193-132203432	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
7	nsv5479	chr6:132101897-132136593	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
8	esv21004	chr6:132106620-132118530	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
9	nsv604667	chr6:132106988-132115081	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132106400-132113000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:132108000-132111000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:132108600-132111000	Enhancers	Osteobl	bone
4	chr6:132109800-132112800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:132109800-132112800	Weak transcription	Fetal Stomach	stomach
6	chr6:132109800-132113000	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:132109800-132113200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:132110200-132112600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:132110400-132111200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:132110800-132112800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:132110800-132113200	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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