Variant report

Variant	rs13218939
Chromosome Location	chr6:132065650-132065651
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11963970	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11964839	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11967363	0.91[AMR][1000 genomes]
rs13211931	1.00[CEU][hapmap]
rs13212870	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13216477	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13218588	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34252573	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35293576	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35845539	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36030138	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56322825	0.91[AMR][1000 genomes]
rs6569757	0.89[EUR][1000 genomes]
rs66714711	0.81[EUR][1000 genomes]
rs66885292	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7765331	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132055200-132065800	Weak transcription	K562	blood
2	chr6:132065000-132066400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:132065200-132065800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr6:132065200-132065800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:132065200-132066000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:132065200-132066400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:132065200-132066400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:132065400-132065800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:132065400-132065800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr6:132065400-132065800	Enhancers	HepG2	liver
11	chr6:132065400-132066200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:132065400-132066200	Enhancers	HUVEC	blood vessel
13	chr6:132065400-132066400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr6:132065600-132065800	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr6:132065600-132066200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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