Variant report

Variant	rs13216477
Chromosome Location	chr6:132080991-132080992
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11963970	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11964839	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11967363	0.91[AMR][1000 genomes]
rs13211931	1.00[CEU][hapmap]
rs13212870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13218588	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13218939	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34252573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34263163	0.89[EUR][1000 genomes]
rs35293576	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35845539	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36030138	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56322825	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6569757	1.00[EUR][1000 genomes]
rs66714711	0.92[EUR][1000 genomes]
rs66885292	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7765331	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv886670	chr6:132071193-132193395	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv886671	chr6:132071193-132203432	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132077400-132083600	Weak transcription	HSMMtube	muscle
2	chr6:132078200-132082200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:132078400-132081400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:132078400-132082200	Weak transcription	HSMM	muscle
5	chr6:132078600-132081000	Weak transcription	HepG2	liver
6	chr6:132078800-132081000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:132080400-132081600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:132080400-132083800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:132080600-132081400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:132080600-132083200	Enhancers	Osteobl	bone
11	chr6:132080600-132086200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:132080800-132081000	Enhancers	Adipose Nuclei	Adipose
13	chr6:132080800-132081600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:132080800-132081600	Enhancers	Ovary	ovary
15	chr6:132080800-132081600	Enhancers	NH-A	brain
16	chr6:132080800-132081800	Enhancers	NHDF-Ad	bronchial
17	chr6:132080800-132081800	Enhancers	NHLF	lung
18	chr6:132080800-132087400	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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