Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1334835	1.00[YRI][hapmap]
rs2011710	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs205964	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs205969	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs205970	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs205973	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2484142	0.81[AFR][1000 genomes]
rs2484144	1.00[YRI][hapmap]
rs2484148	1.00[YRI][hapmap]
rs2484149	1.00[YRI][hapmap]
rs2501519	1.00[YRI][hapmap]
rs2501520	1.00[YRI][hapmap]
rs451051	0.81[AFR][1000 genomes]
rs58818528	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73512490	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73512497	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73514599	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73516324	0.81[AFR][1000 genomes]
rs73516326	0.81[AFR][1000 genomes]
rs73525684	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746741	1.00[JPT][hapmap]
rs928597	1.00[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118377200-118408600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118386600-118409600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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