Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118415452..118418143-chr6:118419953..118422521,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11964656	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1334835	0.82[AFR][1000 genomes]
rs1334837	0.82[AFR][1000 genomes]
rs2011710	0.87[AFR][1000 genomes]
rs205964	0.84[AFR][1000 genomes]
rs205969	0.87[AFR][1000 genomes]
rs205970	0.87[AFR][1000 genomes]
rs205973	0.84[AFR][1000 genomes]
rs2484142	0.87[AFR][1000 genomes]
rs2484144	0.82[AFR][1000 genomes]
rs2484148	0.82[AFR][1000 genomes]
rs2484149	0.82[AFR][1000 genomes]
rs451051	0.81[AFR][1000 genomes]
rs58818528	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73512490	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73512497	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73516324	0.87[AFR][1000 genomes]
rs73516326	0.87[AFR][1000 genomes]
rs73525684	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs928597	0.87[AFR][1000 genomes]
rs933067	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118419400-118422000	Weak transcription	Fetal Brain Male	brain
2	chr6:118421200-118422400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr6:118421400-118422200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:118421400-118422200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:118421400-118422800	Enhancers	Cortex derived primary cultured neurospheres	brain

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