Variant report

Variant	rs205964
Chromosome Location	chr6:118478580-118478581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11964013	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs11964063	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs11964656	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11967448	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1334829	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1334835	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1334837	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs169542	0.82[JPT][hapmap]
rs172239	0.82[JPT][hapmap]
rs176168	0.82[JPT][hapmap]
rs2011710	1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs205936	0.82[JPT][hapmap]
rs205937	0.82[JPT][hapmap]
rs205938	0.82[JPT][hapmap]
rs205939	0.82[JPT][hapmap]
rs205940	0.82[JPT][hapmap]
rs205941	0.82[JPT][hapmap]
rs205943	0.82[JPT][hapmap]
rs205944	0.82[JPT][hapmap]
rs205945	0.82[JPT][hapmap]
rs205946	0.82[JPT][hapmap]
rs205947	0.82[JPT][hapmap]
rs205953	1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs205954	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs205956	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs205960	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs205969	1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs205970	1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs205973	1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs205974	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2105019	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2484142	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2484144	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2484145	1.00[JPT][hapmap]
rs2484148	1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2484149	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2501517	0.82[EUR][1000 genomes]
rs2501519	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2501520	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2859146	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2859147	1.00[JPT][hapmap]
rs28706497	0.82[EUR][1000 genomes]
rs2991964	0.82[EUR][1000 genomes]
rs441671	1.00[ASN][1000 genomes]
rs451051	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73514599	0.84[AFR][1000 genomes]
rs73516320	0.82[EUR][1000 genomes]
rs73516324	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73516326	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7763206	1.00[JPT][hapmap]
rs7763286	0.82[EUR][1000 genomes]
rs928597	1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs933067	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118468000-118485000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:118476800-118485800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:118477000-118480800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:118477000-118484200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:118477600-118479000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:118478400-118484800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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