Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11964013	0.82[JPT][hapmap]
rs11967448	0.82[JPT][hapmap]
rs1334829	0.82[JPT][hapmap]
rs1334835	0.82[JPT][hapmap]
rs150145	0.85[EUR][1000 genomes]
rs169542	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs176168	0.85[EUR][1000 genomes]
rs205929	0.85[EUR][1000 genomes]
rs205931	0.85[EUR][1000 genomes]
rs205932	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs205934	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs205940	0.85[EUR][1000 genomes]
rs205947	1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs205954	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs205956	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs205960	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs205964	1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs205969	0.82[JPT][hapmap]
rs205970	0.82[JPT][hapmap]
rs205973	0.82[JPT][hapmap]
rs2105019	0.82[JPT][hapmap]
rs2484144	0.82[JPT][hapmap]
rs2484145	0.82[JPT][hapmap]
rs2484149	0.82[JPT][hapmap]
rs2501519	0.82[JPT][hapmap]
rs2859146	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2859147	0.82[JPT][hapmap]
rs441671	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73523952	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs928597	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118476800-118485800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:118484200-118486000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:118485000-118486000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:118485200-118486000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:118485200-118487400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:118485200-118489000	Weak transcription	Brain Germinal Matrix	brain

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