Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs150145	1.00[EUR][1000 genomes]
rs169542	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs176168	1.00[EUR][1000 genomes]
rs205926	0.89[ASN][1000 genomes]
rs205927	0.89[ASN][1000 genomes]
rs205928	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs205929	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs205930	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs205931	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs205932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs205933	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs205935	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs205936	0.93[EUR][1000 genomes]
rs205937	0.93[EUR][1000 genomes]
rs205938	0.84[EUR][1000 genomes]
rs205939	0.93[EUR][1000 genomes]
rs205940	1.00[EUR][1000 genomes]
rs205941	0.93[EUR][1000 genomes]
rs205943	0.93[EUR][1000 genomes]
rs205947	0.92[EUR][1000 genomes]
rs205953	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs205954	0.85[EUR][1000 genomes]
rs205956	0.85[EUR][1000 genomes]
rs2859146	0.85[EUR][1000 genomes]
rs441671	0.85[EUR][1000 genomes]
rs73523952	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118504000-118510400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:118509000-118515400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:118509200-118510600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:118509200-118511400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:118509200-118513200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:118509200-118514800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:118509600-118510200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:118509600-118510800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:118509600-118515800	Weak transcription	Adipose Nuclei	Adipose

Quick Search: