Variant report

Variant	rs205927
Chromosome Location	chr6:118518349-118518350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs205926	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs205928	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs205929	1.00[ASN][1000 genomes]
rs205930	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs205931	1.00[ASN][1000 genomes]
rs205932	0.89[ASN][1000 genomes]
rs205933	0.89[ASN][1000 genomes]
rs205934	0.89[ASN][1000 genomes]
rs205935	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118513600-118519800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:118514800-118520800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:118514800-118521000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:118515400-118521600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:118517000-118518400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:118517600-118520200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:118517800-118519200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:118518000-118518400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:118518000-118518400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:118518000-118519000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:118518000-118520200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:118518000-118520200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:118518000-118520200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:118518000-118520600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr6:118518200-118518800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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