Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs150145	0.93[EUR][1000 genomes]
rs169542	0.85[JPT][hapmap];0.85[EUR][1000 genomes]
rs172239	0.85[JPT][hapmap]
rs176168	0.84[JPT][hapmap];0.93[EUR][1000 genomes]
rs205926	0.92[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs205927	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs205929	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs205930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs205931	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs205932	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs205933	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs205934	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs205935	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs205936	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs205937	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs205938	0.85[JPT][hapmap]
rs205939	0.85[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs205940	0.85[JPT][hapmap];0.93[EUR][1000 genomes]
rs205941	0.85[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs205943	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs205944	0.85[JPT][hapmap]
rs205945	0.85[JPT][hapmap]
rs205946	0.85[JPT][hapmap]
rs205947	0.85[JPT][hapmap];0.85[EUR][1000 genomes]
rs205948	1.00[JPT][hapmap]
rs73523952	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118513600-118519800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:118514800-118520800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:118514800-118521000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:118515400-118521600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:118515600-118517600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:118515800-118517400	Enhancers	Adipose Nuclei	Adipose
7	chr6:118515800-118517800	Enhancers	Fetal Lung	lung
8	chr6:118516400-118517400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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