Variant report

Variant	rs205935
Chromosome Location	chr6:118508648-118508649
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118497942..118499914-chr6:118507313..118509277,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs150145	0.93[EUR][1000 genomes]
rs169542	0.85[EUR][1000 genomes]
rs172239	0.85[JPT][hapmap]
rs176168	0.93[EUR][1000 genomes]
rs205926	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs205927	0.89[ASN][1000 genomes]
rs205928	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs205929	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs205930	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs205931	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs205932	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs205933	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs205934	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs205936	0.85[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs205937	0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs205939	0.85[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs205940	0.85[JPT][hapmap];0.93[EUR][1000 genomes]
rs205941	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs205943	0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs205944	0.85[JPT][hapmap]
rs205945	0.85[JPT][hapmap]
rs205946	0.85[JPT][hapmap]
rs205947	0.85[EUR][1000 genomes]
rs205948	0.82[JPT][hapmap]
rs73523952	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118504000-118510400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:118504800-118509600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:118506200-118509200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:118506800-118509000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:118507400-118509600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr6:118507800-118509000	Enhancers	Adipose Nuclei	Adipose
7	chr6:118507800-118509400	Enhancers	NH-A	brain
8	chr6:118508000-118508800	Enhancers	NHDF-Ad	bronchial
9	chr6:118508000-118509400	Enhancers	Fetal Lung	lung
10	chr6:118508200-118508800	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr6:118508200-118508800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr6:118508200-118508800	Enhancers	NHLF	lung
13	chr6:118508200-118509000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:118508200-118509000	Enhancers	Brain Cingulate Gyrus	brain
15	chr6:118508200-118509200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:118508200-118509200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:118508200-118509200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:118508200-118509200	Enhancers	Colon Smooth Muscle	Colon
19	chr6:118508200-118509400	Enhancers	Fetal Heart	heart
20	chr6:118508200-118509400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr6:118508200-118509400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr6:118508200-118509400	Enhancers	Stomach Smooth Muscle	stomach
23	chr6:118508400-118508800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr6:118508400-118508800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr6:118508400-118508800	Flanking Active TSS	Brain Anterior Caudate	brain
26	chr6:118508400-118509000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:118508400-118509200	Weak transcription	Left Ventricle	heart
28	chr6:118508600-118508800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:118508600-118508800	Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr6:118508600-118509000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:118508600-118509200	Flanking Active TSS	GM12878-XiMat	blood
32	chr6:118508600-118509400	Enhancers	Fetal Kidney	kidney
33	chr6:118508600-118509400	Enhancers	Fetal Muscle Leg	muscle
34	chr6:118508600-118509400	Enhancers	Rectal Smooth Muscle	rectum
35	chr6:118508600-118509600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:118508600-118509600	Enhancers	Right Atrium	heart

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