Variant report

Variant	rs205926
Chromosome Location	chr6:118518754-118518755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118517764..118519437-chr6:118521180..118522818,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs169542	0.85[JPT][hapmap]
rs172239	0.85[JPT][hapmap]
rs176168	0.84[JPT][hapmap]
rs205927	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs205928	0.92[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs205929	1.00[ASN][1000 genomes]
rs205930	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs205931	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs205932	0.89[ASN][1000 genomes]
rs205933	0.89[ASN][1000 genomes]
rs205934	0.89[ASN][1000 genomes]
rs205935	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs205936	0.85[JPT][hapmap]
rs205937	0.85[JPT][hapmap]
rs205938	0.85[JPT][hapmap]
rs205939	0.85[JPT][hapmap]
rs205940	0.85[JPT][hapmap]
rs205941	0.85[JPT][hapmap]
rs205943	0.85[JPT][hapmap]
rs205944	0.85[JPT][hapmap]
rs205945	0.85[JPT][hapmap]
rs205946	0.85[JPT][hapmap]
rs205947	0.85[JPT][hapmap]
rs205948	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118513600-118519800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:118514800-118520800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:118514800-118521000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:118515400-118521600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:118517600-118520200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:118517800-118519200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:118518000-118519000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:118518000-118520200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:118518000-118520200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:118518000-118520200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:118518000-118520600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr6:118518200-118518800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:118518400-118518800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr6:118518400-118519200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr6:118518400-118519400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:118518400-118519600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr6:118518400-118520400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:118518600-118519200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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