Variant report

Variant	rs150145
Chromosome Location	chr6:118515047-118515048
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs169542	0.92[EUR][1000 genomes]
rs176168	1.00[EUR][1000 genomes]
rs205928	0.93[EUR][1000 genomes]
rs205929	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs205930	0.93[EUR][1000 genomes]
rs205931	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs205932	1.00[EUR][1000 genomes]
rs205933	0.93[EUR][1000 genomes]
rs205934	1.00[EUR][1000 genomes]
rs205935	0.93[EUR][1000 genomes]
rs205936	0.93[EUR][1000 genomes]
rs205937	0.93[EUR][1000 genomes]
rs205938	0.84[EUR][1000 genomes]
rs205939	0.93[EUR][1000 genomes]
rs205940	1.00[EUR][1000 genomes]
rs205941	0.93[EUR][1000 genomes]
rs205943	0.93[EUR][1000 genomes]
rs205947	0.92[EUR][1000 genomes]
rs205953	0.85[EUR][1000 genomes]
rs205954	0.85[EUR][1000 genomes]
rs205956	0.85[EUR][1000 genomes]
rs2859146	0.85[EUR][1000 genomes]
rs441671	0.85[EUR][1000 genomes]
rs73523952	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118509000-118515400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:118509600-118515800	Weak transcription	Adipose Nuclei	Adipose
3	chr6:118511200-118515600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:118513600-118519800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:118514200-118515400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:118514800-118520800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:118514800-118521000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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