Variant report
| Variant | rs2484145 |
|---|---|
| Chromosome Location | chr6:118431681-118431682 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs11964013 | 1.00[JPT][hapmap] |
| rs11964063 | 1.00[JPT][hapmap] |
| rs11967448 | 1.00[JPT][hapmap] |
| rs1334829 | 1.00[JPT][hapmap] |
| rs1334835 | 1.00[JPT][hapmap] |
| rs169542 | 0.82[JPT][hapmap] |
| rs172239 | 0.82[JPT][hapmap] |
| rs176168 | 0.82[JPT][hapmap] |
| rs2011710 | 1.00[JPT][hapmap] |
| rs205936 | 0.82[JPT][hapmap] |
| rs205937 | 0.82[JPT][hapmap] |
| rs205938 | 0.82[JPT][hapmap] |
| rs205939 | 0.82[JPT][hapmap] |
| rs205940 | 0.82[JPT][hapmap] |
| rs205941 | 0.82[JPT][hapmap] |
| rs205943 | 0.82[JPT][hapmap] |
| rs205944 | 0.82[JPT][hapmap] |
| rs205945 | 0.82[JPT][hapmap] |
| rs205946 | 0.82[JPT][hapmap] |
| rs205947 | 0.82[JPT][hapmap] |
| rs205953 | 0.82[JPT][hapmap] |
| rs205954 | 1.00[JPT][hapmap] |
| rs205956 | 1.00[JPT][hapmap] |
| rs205960 | 1.00[JPT][hapmap] |
| rs205964 | 1.00[JPT][hapmap] |
| rs205969 | 1.00[JPT][hapmap] |
| rs205970 | 1.00[JPT][hapmap] |
| rs205973 | 1.00[JPT][hapmap] |
| rs2105019 | 1.00[JPT][hapmap] |
| rs2484144 | 1.00[JPT][hapmap] |
| rs2484148 | 1.00[JPT][hapmap] |
| rs2484149 | 1.00[JPT][hapmap] |
| rs2501519 | 1.00[JPT][hapmap] |
| rs2501520 | 1.00[JPT][hapmap] |
| rs2859146 | 1.00[JPT][hapmap] |
| rs2859147 | 1.00[JPT][hapmap];0.86[YRI][hapmap] |
| rs4260772 | 0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7763206 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs928597 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530526 | chr6:118027339-118718476 | Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv428153 | chr6:118430517-118586974 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:118428000-118436200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr6:118431000-118432600 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
