Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11964013	1.00[JPT][hapmap]
rs11964063	1.00[JPT][hapmap]
rs11967448	1.00[JPT][hapmap]
rs1334829	1.00[JPT][hapmap]
rs1334835	1.00[JPT][hapmap]
rs2011710	1.00[JPT][hapmap]
rs205954	1.00[JPT][hapmap]
rs205956	1.00[JPT][hapmap]
rs205960	1.00[JPT][hapmap]
rs205964	1.00[JPT][hapmap]
rs205969	1.00[JPT][hapmap]
rs205970	1.00[JPT][hapmap]
rs205973	1.00[JPT][hapmap]
rs2105019	1.00[JPT][hapmap]
rs2484144	1.00[JPT][hapmap]
rs2484145	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2484148	1.00[JPT][hapmap]
rs2484149	1.00[JPT][hapmap]
rs2501519	1.00[JPT][hapmap]
rs2501520	1.00[JPT][hapmap]
rs2859146	1.00[JPT][hapmap]
rs2859147	1.00[JPT][hapmap];0.87[YRI][hapmap]
rs4260772	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs928597	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118424000-118430600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:118425400-118430400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:118428000-118428400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:118428000-118436200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search: