Variant report

Variant	rs4260772
Chromosome Location	chr6:118424498-118424499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2484145	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7763206	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118422000-118424800	Enhancers	Brain Anterior Caudate	brain
2	chr6:118422000-118425600	Enhancers	Fetal Brain Male	brain
3	chr6:118422000-118426000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:118422600-118427800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:118422800-118424600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:118423200-118424800	Enhancers	Left Ventricle	heart
7	chr6:118423400-118424600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:118423400-118424800	Enhancers	Brain Cingulate Gyrus	brain
9	chr6:118423400-118425000	Enhancers	Brain Germinal Matrix	brain
10	chr6:118423400-118425400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:118423400-118425400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:118423400-118428000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:118423800-118424800	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:118423800-118424800	Enhancers	Spleen	Spleen
15	chr6:118424000-118430600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:118424200-118424600	Weak transcription	Fetal Lung	lung
17	chr6:118424400-118425400	Enhancers	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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