Variant report

Variant	rs11964013
Chromosome Location	chr6:118424879-118424880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118423532..118426658-chr6:118429132..118430973,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11964063	1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967448	1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334829	1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334835	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334837	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs169542	0.82[JPT][hapmap]
rs172239	1.00[CHD][hapmap];0.82[JPT][hapmap]
rs176168	0.82[JPT][hapmap]
rs2011710	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs205936	0.82[JPT][hapmap]
rs205937	0.82[JPT][hapmap]
rs205938	0.82[JPT][hapmap]
rs205939	1.00[CHD][hapmap];0.82[JPT][hapmap]
rs205940	1.00[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs205941	1.00[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs205943	0.82[JPT][hapmap]
rs205944	1.00[CHD][hapmap];0.82[JPT][hapmap]
rs205945	1.00[CHD][hapmap];0.82[JPT][hapmap]
rs205946	1.00[CHD][hapmap];0.82[JPT][hapmap]
rs205947	0.82[JPT][hapmap]
rs205953	0.82[JPT][hapmap]
rs205954	1.00[JPT][hapmap]
rs205956	1.00[JPT][hapmap]
rs205960	1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs205964	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs205969	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs205970	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs205973	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs205974	1.00[EUR][1000 genomes]
rs2105019	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2484142	1.00[ASN][1000 genomes]
rs2484144	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2484145	1.00[JPT][hapmap]
rs2484148	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2484149	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2501517	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2501519	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2501520	1.00[JPT][hapmap]
rs2859146	1.00[JPT][hapmap]
rs2859147	1.00[JPT][hapmap]
rs28706497	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2991964	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs451051	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73516320	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73516324	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73516326	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763206	1.00[JPT][hapmap]
rs7763286	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs928597	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs933067	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118422000-118425600	Enhancers	Fetal Brain Male	brain
2	chr6:118422000-118426000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:118422600-118427800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:118423400-118425000	Enhancers	Brain Germinal Matrix	brain
5	chr6:118423400-118425400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:118423400-118425400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:118423400-118428000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:118424000-118430600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:118424400-118425400	Enhancers	Right Ventricle	heart
10	chr6:118424600-118425000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:118424600-118425000	Enhancers	Stomach Smooth Muscle	stomach
12	chr6:118424600-118425600	Enhancers	Fetal Lung	lung
13	chr6:118424800-118425000	Enhancers	Brain Hippocampus Middle	brain

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