Variant report

Variant	rs205974
Chromosome Location	chr6:118456039-118456040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11964013	1.00[EUR][1000 genomes]
rs11964063	1.00[EUR][1000 genomes]
rs11967448	1.00[EUR][1000 genomes]
rs1334829	1.00[EUR][1000 genomes]
rs1334835	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1334837	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2011710	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs205960	1.00[EUR][1000 genomes]
rs205964	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs205969	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs205970	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs205973	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2105019	1.00[EUR][1000 genomes]
rs2484142	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2484144	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2484148	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2484149	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2501517	1.00[EUR][1000 genomes]
rs28706497	1.00[EUR][1000 genomes]
rs2991964	1.00[EUR][1000 genomes]
rs451051	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73516320	1.00[EUR][1000 genomes]
rs73516324	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73516326	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7763286	1.00[EUR][1000 genomes]
rs928597	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs933067	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118453400-118456800	Enhancers	Fetal Lung	lung
2	chr6:118454000-118457200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:118454000-118457400	Enhancers	Fetal Stomach	stomach
4	chr6:118454000-118460200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:118454200-118457200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:118455000-118456400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:118455000-118456400	Enhancers	Fetal Kidney	kidney
8	chr6:118455200-118456200	Enhancers	Brain Cingulate Gyrus	brain
9	chr6:118455200-118457200	Enhancers	Brain Germinal Matrix	brain
10	chr6:118455400-118456200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:118455400-118456400	Enhancers	Brain Anterior Caudate	brain
12	chr6:118455600-118456400	Enhancers	Brain Hippocampus Middle	brain
13	chr6:118455600-118456800	Enhancers	Fetal Muscle Leg	muscle
14	chr6:118455600-118457000	Enhancers	Fetal Brain Male	brain
15	chr6:118455800-118457000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:118456000-118456200	Active TSS	Stomach Smooth Muscle	stomach

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