Variant report

Variant	rs1196473
Chromosome Location	chr7:121647107-121647108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:121647000-121647150	HCT-116	colon:	n/a	n/a
2	CTCF	chr7:121646980-121647130	HEEpiC	esophagus:	n/a	n/a
3	CTCF	chr7:121646980-121647130	WERI-Rb-1	eye:	n/a	n/a
4	RAD21	chr7:121646901-121647171	Hela-S3	cervix:	n/a	n/a
5	RAD21	chr7:121646931-121647120	SK-N-SH_RA	brain:	n/a	n/a
6	CTCF	chr7:121646960-121647110	HEK293	kidney:	n/a	n/a
7	CTCF	chr7:121646939-121647140	Hela-S3	cervix:	n/a	n/a
8	CTCF	chr7:121646947-121647147	GM12878	blood:	n/a	n/a
9	CTCF	chr7:121646960-121647110	HRE	kidney:	n/a	n/a
10	RAD21	chr7:121646704-121647318	HCT-116	colon:	n/a	n/a
11	CTCF	chr7:121647060-121647210	HEEpiC	esophagus:	n/a	n/a
12	CTCF	chr7:121646929-121647139	NHEK	skin:	n/a	n/a
13	RAD21	chr7:121646788-121647204	H1-hESC	embryonic stem cell:	n/a	n/a
14	RAD21	chr7:121646828-121647215	H1-hESC	embryonic stem cell:	n/a	n/a
15	RAD21	chr7:121646892-121647115	SK-N-SH_RA	brain:	n/a	n/a
16	RAD21	chr7:121646847-121647214	H1-hESC	embryonic stem cell:	n/a	n/a
17	CTCF	chr7:121646960-121647110	HMEC	breast:	n/a	n/a
18	RAD21	chr7:121646792-121647231	HCT-116	colon:	n/a	n/a
19	CTCF	chr7:121647000-121647150	SK-N-SH_RA	brain:	n/a	n/a
20	CTCF	chr7:121646972-121647109	Gliobla	brain:	n/a	n/a
21	ZNF143	chr7:121647007-121647160	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
PTPRZ1	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1147497	0.82[YRI][hapmap]
rs1196474	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1196475	0.90[YRI][hapmap]
rs1206387	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121624000-121647800	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:121625000-121650800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:121626000-121650600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:121626000-121651000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:121626400-121650400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:121627800-121650600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:121628200-121650000	Weak transcription	Brain Germinal Matrix	brain
8	chr7:121629000-121650000	Weak transcription	Fetal Brain Female	brain
9	chr7:121633200-121649200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:121634400-121706000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:121635200-121647400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:121635400-121650800	Weak transcription	Fetal Brain Male	brain
13	chr7:121639200-121650400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:121639600-121649000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr7:121639600-121650000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:121639800-121650200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:121640200-121649000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:121645800-121647400	Enhancers	NHEK	skin
19	chr7:121645800-121654000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:121646000-121652600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr7:121646200-121647200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:121646400-121647200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr7:121646400-121647400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:121646600-121647400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:121646600-121647600	Enhancers	HMEC	breast
26	chr7:121646800-121647200	Enhancers	HUVEC	blood vessel
27	chr7:121646800-121648400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr7:121647000-121647200	Enhancers	Gastric	stomach
29	chr7:121647000-121649800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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