Variant report

Variant	rs1196475
Chromosome Location	chr7:121649223-121649224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:121649207-121649351	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
PTPRZ1	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1147487	0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs1147497	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.81[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1196471	0.84[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1196472	0.86[ASN][1000 genomes]
rs1196473	0.90[YRI][hapmap]
rs1196474	0.83[YRI][hapmap]
rs1196501	0.85[ASN][1000 genomes]
rs1196506	0.82[ASN][1000 genomes]
rs1196512	0.90[CHB][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs1206355	0.83[ASN][1000 genomes]
rs1206381	0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs1638950	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2693657	0.90[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121625000-121650800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:121626000-121650600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:121626000-121651000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:121626400-121650400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:121627800-121650600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:121628200-121650000	Weak transcription	Brain Germinal Matrix	brain
7	chr7:121629000-121650000	Weak transcription	Fetal Brain Female	brain
8	chr7:121634400-121706000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:121635400-121650800	Weak transcription	Fetal Brain Male	brain
10	chr7:121639200-121650400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:121639600-121650000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:121639800-121650200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:121645800-121654000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:121646000-121652600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr7:121647000-121649800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:121647200-121650400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:121647200-121650800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:121647200-121651000	Weak transcription	Gastric	stomach
19	chr7:121647400-121650000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:121647400-121650200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:121647400-121650400	Weak transcription	NHEK	skin
22	chr7:121647800-121649600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr7:121648400-121650200	Weak transcription	Brain Angular Gyrus	brain
24	chr7:121648400-121654200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr7:121648800-121653000	Weak transcription	Brain Hippocampus Middle	brain
26	chr7:121649000-121652400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:121649000-121654000	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr7:121649000-121654000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr7:121649200-121650800	Weak transcription	Aorta	Aorta
30	chr7:121649200-121654000	Strong transcription	H9 Cell Line	embryonic stem cell

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