Variant report

Variant	rs1196506
Chromosome Location	chr7:121628015-121628016
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1147497	0.82[ASN][1000 genomes]
rs1196471	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1196472	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1196475	0.82[ASN][1000 genomes]
rs1196501	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1196504	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1196507	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196508	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1196512	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1196513	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1196514	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2693657	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4301385	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121603400-121631400	Weak transcription	NHEK	skin
2	chr7:121612600-121629200	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:121613200-121635000	Weak transcription	Fetal Brain Male	brain
4	chr7:121614400-121633200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:121614600-121629000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:121618600-121632800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:121618800-121633800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:121619800-121633600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:121621000-121628800	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr7:121621400-121629200	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:121623000-121629000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:121623200-121628600	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:121623600-121628200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:121624000-121647800	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr7:121625000-121635200	Weak transcription	Brain Substantia Nigra	brain
16	chr7:121625000-121650800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:121626000-121631800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:121626000-121650600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:121626000-121651000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr7:121626400-121650400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:121626600-121628600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr7:121627400-121628400	Strong transcription	Fetal Brain Female	brain
23	chr7:121627600-121628200	Strong transcription	Brain Germinal Matrix	brain
24	chr7:121627800-121633400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:121627800-121636600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:121627800-121650600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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