Variant report

Variant	rs2693657
Chromosome Location	chr7:121637265-121637266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1147487	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1147497	0.90[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1196471	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1196472	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1196475	0.90[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1196501	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1196504	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1196506	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1196507	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1196508	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1196512	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1196513	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1196514	0.96[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1206381	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs4301385	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2693657	RNF148	cis	parietal	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121624000-121647800	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:121625000-121650800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:121626000-121650600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:121626000-121651000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:121626400-121650400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:121627800-121650600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:121628200-121650000	Weak transcription	Brain Germinal Matrix	brain
8	chr7:121629000-121650000	Weak transcription	Fetal Brain Female	brain
9	chr7:121632400-121645800	Weak transcription	NHEK	skin
10	chr7:121632400-121646400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:121633200-121649200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:121634400-121706000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:121635200-121639400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:121635200-121639800	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:121635200-121647400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:121635400-121650800	Weak transcription	Fetal Brain Male	brain
17	chr7:121635600-121639600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr7:121635800-121639600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr7:121636400-121639600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:121636400-121640200	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:121636400-121640600	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr7:121636600-121639600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:121636800-121637600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr7:121637000-121638400	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr7:121637200-121639200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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