Variant report

Variant	rs1196512
Chromosome Location	chr7:121623166-121623167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1147487	0.85[CHB][hapmap]
rs1147497	0.90[CHB][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap]
rs1196471	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1196472	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1196475	0.90[CHB][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs1196501	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1196504	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1196506	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1196507	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1196508	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1196513	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1196514	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1206381	0.85[CHB][hapmap]
rs2693657	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4301385	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121601600-121628000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:121601800-121625600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:121603400-121631400	Weak transcription	NHEK	skin
4	chr7:121605800-121627600	Weak transcription	Brain Germinal Matrix	brain
5	chr7:121607800-121625400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:121612600-121629200	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:121613200-121635000	Weak transcription	Fetal Brain Male	brain
8	chr7:121613800-121624000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:121614400-121633200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:121614600-121629000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:121618600-121632800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:121618800-121633800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:121619000-121624400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:121619200-121623800	Weak transcription	Fetal Brain Female	brain
15	chr7:121619400-121623800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:121619400-121624600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:121619800-121624800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:121619800-121627800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr7:121619800-121633600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:121620400-121623200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:121621000-121628800	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr7:121621400-121629200	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:121621800-121623800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:121622200-121623600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:121622800-121626600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:121623000-121623800	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr7:121623000-121629000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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