Variant report

Variant	rs1147497
Chromosome Location	chr7:121671127-121671128
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1147487	0.95[CHB][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1196471	0.85[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1196472	0.86[ASN][1000 genomes]
rs1196473	0.82[YRI][hapmap]
rs1196474	0.83[YRI][hapmap]
rs1196475	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.81[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1196501	0.84[ASN][1000 genomes]
rs1196506	0.82[ASN][1000 genomes]
rs1196512	0.90[CHB][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap]
rs1206355	0.88[ASN][1000 genomes]
rs1206381	0.80[CEU][hapmap];0.95[CHB][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1638950	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2693657	0.90[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608334	chr7:121670522-121725961	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121634400-121706000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121651200-121717600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:121652200-121679000	Weak transcription	NHEK	skin
4	chr7:121652400-121683200	Weak transcription	Brain Germinal Matrix	brain
5	chr7:121653800-121672600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:121653800-121673600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:121654000-121672200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:121654000-121672400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:121654000-121673200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:121654000-121675400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:121654000-121675600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:121654000-121679000	Weak transcription	Fetal Brain Female	brain
13	chr7:121654000-121679400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:121654200-121671200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:121655600-121699000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:121663800-121705600	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:121667400-121678000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:121667800-121696200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr7:121668000-121696800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr7:121668200-121697000	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr7:121669000-121672200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:121670600-121680600	Weak transcription	Fetal Brain Male	brain
23	chr7:121670800-121671200	Enhancers	Pancreatic Islets	Pancreatic Islet

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