Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10485427	0.85[LWK][hapmap];0.86[MKK][hapmap];0.82[YRI][hapmap];0.82[ASN][1000 genomes]
rs10485430	0.84[CHD][hapmap]
rs11759629	0.83[CHD][hapmap];0.85[LWK][hapmap];0.88[MKK][hapmap]
rs12524905	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1384248	0.81[LWK][hapmap]
rs17403445	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1959407	0.84[CHD][hapmap]
rs2086599	0.82[ASN][1000 genomes]
rs34958835	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3799009	0.82[CEU][hapmap]
rs55768432	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55835027	0.82[ASN][1000 genomes]
rs56285512	0.93[ASN][1000 genomes]
rs62406770	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62406772	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62406774	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62406777	0.82[ASN][1000 genomes]
rs62406778	0.82[ASN][1000 genomes]
rs62406779	0.82[ASN][1000 genomes]
rs62416813	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913677	0.81[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv603633	chr6:69748600-69794079	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69753600-69794800	Weak transcription	Fetal Lung	lung
2	chr6:69760400-69800200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69784000-69797800	Weak transcription	Brain Angular Gyrus	brain

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