Variant report

Variant	rs12524905
Chromosome Location	chr6:69821183-69821184
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10485427	1.00[CHB][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs11759629	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs11759965	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs11964764	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12528123	1.00[CHB][hapmap]
rs1482328	1.00[CHB][hapmap]
rs1482331	1.00[CHB][hapmap]
rs1512231	1.00[CHB][hapmap]
rs1567659	1.00[CHB][hapmap]
rs16900558	1.00[CHB][hapmap]
rs16900579	1.00[CHB][hapmap]
rs17403445	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17432036	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs17509972	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs17509993	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs1825195	1.00[CHB][hapmap]
rs2086599	1.00[ASN][1000 genomes]
rs34958835	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3778238	1.00[CHB][hapmap]
rs3799050	1.00[CHB][hapmap]
rs4457127	1.00[CHB][hapmap]
rs4706126	0.96[ASN][1000 genomes]
rs4706866	1.00[CHB][hapmap]
rs55768432	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55835027	1.00[ASN][1000 genomes]
rs56285512	0.89[ASN][1000 genomes]
rs62406770	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62406772	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62406774	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62406777	1.00[ASN][1000 genomes]
rs62406778	1.00[ASN][1000 genomes]
rs62406779	1.00[ASN][1000 genomes]
rs62406781	0.96[ASN][1000 genomes]
rs62406791	0.93[AFR][1000 genomes]
rs62416813	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6918978	1.00[CHB][hapmap]
rs9294820	1.00[CHB][hapmap]
rs9294821	1.00[CHB][hapmap]
rs9294822	1.00[CHB][hapmap]
rs9342742	1.00[CHB][hapmap]
rs9346262	0.96[ASN][1000 genomes]
rs9346266	1.00[CHB][hapmap]
rs9354818	0.89[ASN][1000 genomes]
rs9360374	0.96[ASN][1000 genomes]
rs9360376	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3849	chr6:69818249-69825384	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69820400-69822400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:69820600-69821400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:69820600-69822400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:69820800-69822000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:69821000-69822200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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