Variant report

Variant	rs17509972
Chromosome Location	chr6:69840327-69840328
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10485427	1.00[CHB][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs11759629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968068	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524905	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs12527069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12528123	1.00[CHB][hapmap]
rs1482328	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1482329	1.00[ASN][1000 genomes]
rs1482331	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1512231	1.00[CHB][hapmap]
rs1567659	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1586042	0.92[ASN][1000 genomes]
rs1586043	0.92[ASN][1000 genomes]
rs1592054	0.92[ASN][1000 genomes]
rs1592056	0.92[ASN][1000 genomes]
rs1600873	0.92[ASN][1000 genomes]
rs16900558	1.00[CHB][hapmap]
rs16900579	1.00[CHB][hapmap]
rs17432036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17509993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1825195	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1825196	0.92[ASN][1000 genomes]
rs2086599	0.84[AFR][1000 genomes]
rs2128291	0.92[ASN][1000 genomes]
rs3778238	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3799050	1.00[CHB][hapmap]
rs4457127	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs4706866	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55752088	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55768432	0.91[AFR][1000 genomes]
rs55835027	0.82[AFR][1000 genomes]
rs56199922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62406778	0.84[AFR][1000 genomes]
rs62406779	0.82[AFR][1000 genomes]
rs62406781	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62406787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62406790	0.89[ASN][1000 genomes]
rs62406791	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62406797	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6918978	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6920644	1.00[ASN][1000 genomes]
rs6929969	0.92[ASN][1000 genomes]
rs7747753	0.92[ASN][1000 genomes]
rs7760630	1.00[ASN][1000 genomes]
rs9294820	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9294821	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9294822	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9342741	0.92[ASN][1000 genomes]
rs9342742	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9342743	0.81[ASN][1000 genomes]
rs9346266	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs9351745	1.00[ASN][1000 genomes]
rs9354820	0.92[ASN][1000 genomes]
rs9360375	0.86[ASN][1000 genomes]
rs9360376	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9360377	0.92[ASN][1000 genomes]
rs9360379	0.92[ASN][1000 genomes]
rs9446099	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2754259	chr6:69825681-69858930	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69840200-69841000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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