Variant report

Variant	rs12528123
Chromosome Location	chr6:69898036-69898037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10485427	1.00[CHB][hapmap]
rs11759629	1.00[CHB][hapmap]
rs11759965	1.00[CHB][hapmap]
rs11760008	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524905	1.00[CHB][hapmap]
rs12527069	0.83[ASN][1000 genomes]
rs1482328	1.00[CHB][hapmap]
rs1482331	1.00[CHB][hapmap]
rs1512231	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs1567659	1.00[CHB][hapmap]
rs1586042	0.83[ASN][1000 genomes]
rs1586043	0.83[ASN][1000 genomes]
rs1592054	0.83[ASN][1000 genomes]
rs1592056	0.83[ASN][1000 genomes]
rs1600873	0.83[ASN][1000 genomes]
rs16900558	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900579	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs17432036	1.00[CHB][hapmap]
rs17509972	1.00[CHB][hapmap]
rs17509993	1.00[CHB][hapmap]
rs1825195	1.00[CHB][hapmap]
rs1825196	0.83[ASN][1000 genomes]
rs2128291	0.83[ASN][1000 genomes]
rs3778238	1.00[CHB][hapmap]
rs3799050	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4457127	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs4706866	1.00[CHB][hapmap]
rs55752088	0.83[ASN][1000 genomes]
rs56127974	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56199922	0.83[ASN][1000 genomes]
rs62406781	0.82[AFR][1000 genomes]
rs62406797	0.83[ASN][1000 genomes]
rs6918978	1.00[CHB][hapmap]
rs6929969	0.83[ASN][1000 genomes]
rs73469401	0.82[EUR][1000 genomes]
rs7747753	0.83[ASN][1000 genomes]
rs9294820	1.00[CHB][hapmap]
rs9294821	1.00[CHB][hapmap]
rs9294822	1.00[CHB][hapmap]
rs9342742	1.00[CHB][hapmap]
rs9346266	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs9360376	1.00[CHB][hapmap]
rs9360379	0.83[ASN][1000 genomes]
rs9446099	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv526130	chr6:69851816-69922327	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1029637	chr6:69855697-69916758	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886138	chr6:69865641-69924282	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69897800-69906200	Weak transcription	Brain Angular Gyrus	brain

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