Variant report
| Variant | rs16900579 |
|---|---|
| Chromosome Location | chr6:69938517-69938518 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:69935979..69939701-chr6:69947951..69949800,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10485427 | 1.00[CHB][hapmap] |
| rs11751520 | 0.81[EUR][1000 genomes] |
| rs11759629 | 1.00[CHB][hapmap];0.81[CHD][hapmap] |
| rs11759965 | 1.00[CHB][hapmap] |
| rs11760008 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12524905 | 1.00[CHB][hapmap] |
| rs12528123 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1482328 | 1.00[CHB][hapmap] |
| rs1482331 | 1.00[CHB][hapmap] |
| rs1512231 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1567659 | 1.00[CHB][hapmap] |
| rs16900558 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17432036 | 1.00[CHB][hapmap] |
| rs17509972 | 1.00[CHB][hapmap] |
| rs17509993 | 1.00[CHB][hapmap] |
| rs1825195 | 1.00[CHB][hapmap] |
| rs3778238 | 1.00[CHB][hapmap] |
| rs3799050 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4457127 | 1.00[CHB][hapmap] |
| rs4706866 | 1.00[CHB][hapmap] |
| rs56127974 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6918978 | 1.00[CHB][hapmap] |
| rs73469401 | 0.85[EUR][1000 genomes] |
| rs9294820 | 1.00[CHB][hapmap] |
| rs9294821 | 1.00[CHB][hapmap] |
| rs9294822 | 1.00[CHB][hapmap] |
| rs9342742 | 1.00[CHB][hapmap] |
| rs9346266 | 1.00[CHB][hapmap] |
| rs9360376 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886137 | chr6:69684850-70095690 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv432919 | chr6:69873179-70221322 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
