Variant report

Variant	rs56199922
Chromosome Location	chr6:69853964-69853965
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10485427	0.84[AFR][1000 genomes]
rs11759629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11759965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11760008	0.83[ASN][1000 genomes]
rs11968068	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12527069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528123	0.83[ASN][1000 genomes]
rs1482328	0.92[ASN][1000 genomes]
rs1482329	0.92[ASN][1000 genomes]
rs1482331	0.92[ASN][1000 genomes]
rs1567659	0.92[ASN][1000 genomes]
rs1586042	1.00[ASN][1000 genomes]
rs1586043	1.00[ASN][1000 genomes]
rs1592054	1.00[ASN][1000 genomes]
rs1592056	1.00[ASN][1000 genomes]
rs1600873	1.00[ASN][1000 genomes]
rs16900558	0.83[ASN][1000 genomes]
rs17432036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17509972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17509993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1825195	0.92[ASN][1000 genomes]
rs1825196	1.00[ASN][1000 genomes]
rs2086599	0.84[AFR][1000 genomes]
rs2128291	1.00[ASN][1000 genomes]
rs3778238	0.92[ASN][1000 genomes]
rs3799050	0.83[ASN][1000 genomes]
rs4457127	1.00[ASN][1000 genomes]
rs4706866	0.92[ASN][1000 genomes]
rs55752088	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55768432	0.91[AFR][1000 genomes]
rs55835027	0.82[AFR][1000 genomes]
rs62406778	0.84[AFR][1000 genomes]
rs62406779	0.82[AFR][1000 genomes]
rs62406781	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62406787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62406790	0.81[ASN][1000 genomes]
rs62406791	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62406797	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918978	0.92[ASN][1000 genomes]
rs6920644	0.92[ASN][1000 genomes]
rs6929969	1.00[ASN][1000 genomes]
rs7747753	1.00[ASN][1000 genomes]
rs7760630	0.92[ASN][1000 genomes]
rs9294820	0.92[ASN][1000 genomes]
rs9294821	0.92[ASN][1000 genomes]
rs9294822	0.92[ASN][1000 genomes]
rs9342741	0.85[ASN][1000 genomes]
rs9342742	0.92[ASN][1000 genomes]
rs9342743	0.89[ASN][1000 genomes]
rs9346266	1.00[ASN][1000 genomes]
rs9351745	0.92[ASN][1000 genomes]
rs9354820	0.85[ASN][1000 genomes]
rs9360376	0.92[ASN][1000 genomes]
rs9360377	0.85[ASN][1000 genomes]
rs9360379	1.00[ASN][1000 genomes]
rs9446099	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2754259	chr6:69825681-69858930	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv526130	chr6:69851816-69922327	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69853400-69855000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:69853800-69855000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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