Variant report
| Variant | rs62406781 |
|---|---|
| Chromosome Location | chr6:69830799-69830800 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10485427 | 0.96[ASN][1000 genomes] |
| rs11759629 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11759965 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11968068 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12524905 | 0.96[ASN][1000 genomes] |
| rs12527069 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs12528123 | 0.82[AFR][1000 genomes] |
| rs16900558 | 0.82[AFR][1000 genomes] |
| rs17403445 | 0.86[ASN][1000 genomes] |
| rs17432036 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17509972 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17509993 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2086599 | 0.96[ASN][1000 genomes] |
| rs34958835 | 0.86[ASN][1000 genomes] |
| rs3799050 | 0.82[AFR][1000 genomes] |
| rs4706126 | 1.00[ASN][1000 genomes] |
| rs55752088 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs55768432 | 0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs55835027 | 0.96[ASN][1000 genomes] |
| rs56199922 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs56285512 | 0.86[ASN][1000 genomes] |
| rs62406770 | 0.86[ASN][1000 genomes] |
| rs62406772 | 0.86[ASN][1000 genomes] |
| rs62406774 | 0.86[ASN][1000 genomes] |
| rs62406777 | 0.96[ASN][1000 genomes] |
| rs62406778 | 0.96[ASN][1000 genomes] |
| rs62406779 | 0.96[ASN][1000 genomes] |
| rs62406787 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62406791 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62406797 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9346262 | 1.00[ASN][1000 genomes] |
| rs9346263 | 0.83[ASN][1000 genomes] |
| rs9354818 | 0.92[ASN][1000 genomes] |
| rs9360374 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886137 | chr6:69684850-70095690 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv2754259 | chr6:69825681-69858930 | Enhancers Weak transcription ZNF genes & repeats Active TSS | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:69821400-69832200 | Weak transcription | Brain Hippocampus Middle | brain |
| 2 | chr6:69822000-69831400 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
