Variant report

Variant	rs1196510
Chromosome Location	chr7:121608449-121608450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1196477	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1196478	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1196488	0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1196491	0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1196493	0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1196494	0.84[ASN][1000 genomes]
rs1196495	0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1196511	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1721857	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1721858	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1916876	0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2690271	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2690272	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121582600-121617600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:121592000-121609600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:121596000-121618400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:121601600-121628000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:121601800-121625600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:121602000-121614600	Weak transcription	Fetal Brain Female	brain
7	chr7:121602400-121618200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:121603400-121631400	Weak transcription	NHEK	skin
9	chr7:121603600-121614800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:121604000-121616600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:121605800-121627600	Weak transcription	Brain Germinal Matrix	brain
12	chr7:121606200-121612000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:121606400-121609000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:121606800-121614800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr7:121607400-121619400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr7:121607600-121613600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:121607800-121608800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:121607800-121609000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr7:121607800-121614600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:121607800-121617400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr7:121607800-121625400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr7:121608000-121608800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr7:121608000-121609600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr7:121608000-121609800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr7:121608200-121609400	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr7:121608200-121609800	Strong transcription	HUES64 Cell Line	embryonic stem cell

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