Variant report

Variant	rs1196511
Chromosome Location	chr7:121607011-121607012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WNT16-4	chr7:121606973-121607077	NONHSAT123015

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1011693	0.80[EUR][1000 genomes]
rs1024713	0.83[EUR][1000 genomes]
rs11767822	0.90[EUR][1000 genomes]
rs1196477	0.88[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs1196478	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1196480	0.87[AMR][1000 genomes]
rs1196481	0.87[AMR][1000 genomes]
rs1196483	0.87[AMR][1000 genomes]
rs1196484	0.87[AMR][1000 genomes]
rs1196486	0.81[AMR][1000 genomes]
rs1196487	0.87[AMR][1000 genomes]
rs1196488	1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196490	0.86[AMR][1000 genomes]
rs1196491	1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196493	1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1196494	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196495	1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196496	0.97[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1196510	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1206486	0.83[EUR][1000 genomes]
rs1206487	0.83[EUR][1000 genomes]
rs1206488	0.83[EUR][1000 genomes]
rs1206490	0.83[EUR][1000 genomes]
rs1206492	0.83[EUR][1000 genomes]
rs1206494	0.80[EUR][1000 genomes]
rs1206500	0.81[EUR][1000 genomes]
rs1206501	0.81[EUR][1000 genomes]
rs1206502	0.82[EUR][1000 genomes]
rs1206504	0.83[EUR][1000 genomes]
rs1206505	0.83[EUR][1000 genomes]
rs1206507	0.83[EUR][1000 genomes]
rs1206509	0.83[EUR][1000 genomes]
rs1206514	0.83[EUR][1000 genomes]
rs1206516	0.83[EUR][1000 genomes]
rs1206517	0.83[EUR][1000 genomes]
rs1211621	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12671846	0.89[EUR][1000 genomes]
rs1526314	0.84[EUR][1000 genomes]
rs1721857	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1721858	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1721859	0.85[AMR][1000 genomes]
rs1916875	0.89[EUR][1000 genomes]
rs1916876	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2024252	0.86[AMR][1000 genomes]
rs2690271	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2690272	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4629793	0.90[EUR][1000 genomes]
rs4731044	0.86[AMR][1000 genomes]
rs6961716	0.86[AMR][1000 genomes]
rs6967270	0.86[AMR][1000 genomes]
rs727766	0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7794741	0.86[AMR][1000 genomes]
rs7810556	0.87[AMR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121582600-121617600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:121592000-121609600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:121596000-121618400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:121601600-121628000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:121601800-121607200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:121601800-121625600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:121602000-121614600	Weak transcription	Fetal Brain Female	brain
8	chr7:121602400-121618200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:121603400-121631400	Weak transcription	NHEK	skin
10	chr7:121603600-121614800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:121604000-121616600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:121604600-121607800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr7:121604800-121607800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr7:121605400-121607600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:121605600-121607800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr7:121605800-121607800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr7:121605800-121627600	Weak transcription	Brain Germinal Matrix	brain
18	chr7:121606200-121607200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr7:121606200-121607400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr7:121606200-121612000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr7:121606400-121609000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:121606600-121607800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr7:121606800-121608000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr7:121606800-121614800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:121607000-121607400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr7:121607000-121607800	Enhancers	HUES6 Cell Line	embryonic stem cell

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