Variant report

Variant	rs1011693
Chromosome Location	chr7:121560452-121560453
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1007784	0.88[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1024713	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11767822	0.92[CEU][hapmap];0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1196480	0.86[EUR][1000 genomes]
rs1196481	0.86[EUR][1000 genomes]
rs1196483	0.86[EUR][1000 genomes]
rs1196484	0.86[EUR][1000 genomes]
rs1196486	0.84[EUR][1000 genomes]
rs1196487	0.87[EUR][1000 genomes]
rs1196488	0.81[EUR][1000 genomes]
rs1196490	0.87[EUR][1000 genomes]
rs1196491	0.80[EUR][1000 genomes]
rs1196511	0.80[EUR][1000 genomes]
rs11978007	0.82[JPT][hapmap]
rs1206473	0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs1206477	0.88[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1206480	0.87[ASN][1000 genomes]
rs1206481	0.88[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1206482	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1206483	0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1206486	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206487	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1206488	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1206490	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1206492	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1206494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1206500	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1206501	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1206502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1206504	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1206505	0.82[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1206507	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1206509	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1206514	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1206516	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1206517	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1211621	0.81[EUR][1000 genomes]
rs12671846	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1526314	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1721859	0.86[EUR][1000 genomes]
rs1916875	0.92[CEU][hapmap];0.86[CHB][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1916876	0.81[EUR][1000 genomes]
rs1916880	0.83[JPT][hapmap]
rs1916886	0.82[JPT][hapmap]
rs1916888	0.82[JPT][hapmap]
rs1916889	0.83[JPT][hapmap]
rs2024249	0.82[JPT][hapmap]
rs2024252	0.87[EUR][1000 genomes]
rs28530500	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3757549	0.83[JPT][hapmap]
rs3757550	0.82[JPT][hapmap]
rs4629793	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4731044	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs6961716	0.87[EUR][1000 genomes]
rs6967270	0.87[EUR][1000 genomes]
rs727766	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs740964	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs7794741	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs7797305	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121545600-121571400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:121550600-121561400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:121555000-121563600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:121555400-121561200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:121555400-121565000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:121557400-121565600	Weak transcription	Fetal Brain Male	brain
7	chr7:121557600-121564400	Weak transcription	Brain Germinal Matrix	brain
8	chr7:121558000-121561400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:121558400-121565000	Weak transcription	Fetal Brain Female	brain
10	chr7:121558800-121560600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:121559400-121561600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:121559600-121560800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:121559600-121564600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr7:121560000-121560600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:121560000-121561000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:121560200-121562400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:121560400-121560600	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links