Variant report

Variant	rs1206473
Chromosome Location	chr7:121528493-121528494
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121526936..121528958-chr7:121532150..121533676,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1007522	0.88[CEU][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1007784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1011693	0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs10256242	0.81[CEU][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.80[TSI][hapmap]
rs10275407	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11978007	0.89[CEU][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1206477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1206480	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1206481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1206482	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1206483	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1206486	0.88[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs1206487	0.84[ASN][1000 genomes]
rs1206488	0.93[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs1206490	0.84[ASN][1000 genomes]
rs1206492	1.00[ASW][hapmap];0.87[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.83[MKK][hapmap];0.84[ASN][1000 genomes]
rs1206494	0.84[ASN][1000 genomes]
rs1206500	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs1206501	0.86[JPT][hapmap]
rs12666526	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1916880	1.00[CEU][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1916883	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1916886	1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[TSI][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1916887	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1916888	0.92[CEU][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1916889	0.92[CEU][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2024249	0.89[CEU][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2191782	0.89[EUR][1000 genomes]
rs2215572	0.89[CEU][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3757549	0.89[CEU][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3757550	0.81[GIH][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs740960	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs740964	1.00[ASW][hapmap];0.85[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7778179	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7797305	0.81[CEU][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.80[TSI][hapmap]
rs7808915	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs960539	0.89[CEU][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121515600-121543600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121521600-121529800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:121522000-121530400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:121522600-121550000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:121523200-121539800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:121523200-121552600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:121523600-121529800	Weak transcription	NHEK	skin
8	chr7:121525400-121531600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:121525600-121530800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:121526000-121530000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:121526200-121531000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:121527200-121531200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:121527400-121531000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr7:121527400-121540600	Weak transcription	Fetal Brain Female	brain
15	chr7:121527600-121528600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:121527600-121529400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:121528000-121550000	Weak transcription	Brain Germinal Matrix	brain
18	chr7:121528200-121529600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr7:121528400-121529800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:121528400-121530200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:121528400-121531000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr7:121528400-121531200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:121528400-121531800	Weak transcription	Fetal Brain Male	brain

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