Variant report

Variant	rs1007522
Chromosome Location	chr7:121527480-121527481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121526936..121528958-chr7:121532150..121533676,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1007784	0.88[CEU][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10246475	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10256242	0.90[CHB][hapmap];0.87[CHD][hapmap];0.91[JPT][hapmap];0.80[MKK][hapmap];0.82[TSI][hapmap];0.85[YRI][hapmap]
rs10275407	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11978007	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1206473	0.88[CEU][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1206477	0.92[CEU][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1206480	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1206481	0.88[CEU][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1206482	0.88[CEU][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1206483	0.88[CEU][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes]
rs12666526	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1916880	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1916883	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1916886	0.81[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1916887	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1916888	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1916889	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2024249	0.89[ASW][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2191782	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2215572	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2402590	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28530500	0.82[ASN][1000 genomes]
rs3757549	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3757550	0.95[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs740960	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs740963	0.86[ASN][1000 genomes]
rs740964	0.81[CEU][hapmap];0.80[CHD][hapmap];0.91[JPT][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes]
rs7778179	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7797305	0.90[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.82[TSI][hapmap];0.85[YRI][hapmap]
rs7802916	0.86[ASN][1000 genomes]
rs7808915	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7809971	0.91[ASN][1000 genomes]
rs7811200	0.86[ASN][1000 genomes]
rs960539	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1007522	TAS2R16	cis	parietal	SCAN
rs1007522	KCND2	cis	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121515600-121543600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121521600-121529800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:121522000-121530400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:121522400-121527600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:121522400-121528400	Enhancers	Fetal Brain Male	brain
6	chr7:121522600-121550000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:121523200-121539800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:121523200-121552600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:121523600-121529800	Weak transcription	NHEK	skin
10	chr7:121525400-121531600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:121525600-121527600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:121525600-121530800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:121525800-121527600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:121526000-121530000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:121526200-121531000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr7:121526400-121528000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:121527000-121528400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:121527200-121528400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr7:121527200-121531200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:121527400-121527600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:121527400-121531000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr7:121527400-121540600	Weak transcription	Fetal Brain Female	brain

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