Variant report

Variant	rs7811200
Chromosome Location	chr7:121473237-121473238
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1007522	0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.86[ASN][1000 genomes]
rs1007784	0.96[JPT][hapmap]
rs1011693	0.83[JPT][hapmap]
rs1014171	0.84[AMR][1000 genomes]
rs10238474	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10246475	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10256242	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10275407	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11768615	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11978007	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1206473	0.95[JPT][hapmap]
rs1206477	0.96[JPT][hapmap]
rs1206481	0.96[JPT][hapmap]
rs1206483	0.96[JPT][hapmap]
rs1206486	0.83[JPT][hapmap]
rs1206488	0.83[JPT][hapmap]
rs1206492	0.82[JPT][hapmap]
rs1206500	0.83[JPT][hapmap]
rs1206501	0.82[JPT][hapmap]
rs12111892	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12666526	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13231796	0.84[EUR][1000 genomes]
rs13243402	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1916880	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[ASN][1000 genomes]
rs1916883	0.86[ASN][1000 genomes]
rs1916886	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[ASN][1000 genomes]
rs1916887	0.86[ASN][1000 genomes]
rs1916888	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1916889	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2024249	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2052134	0.85[AMR][1000 genomes]
rs2191782	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2215572	0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2402590	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3757549	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3757550	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs740960	0.86[ASN][1000 genomes]
rs740961	0.83[AMR][1000 genomes]
rs740963	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740964	0.95[JPT][hapmap]
rs7778179	0.83[ASN][1000 genomes]
rs7797305	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7802916	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808915	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7809971	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs960539	0.95[CHB][hapmap];0.96[JPT][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121471400-121475600	Enhancers	Fetal Brain Male	brain
2	chr7:121471800-121473600	Enhancers	Fetal Lung	lung
3	chr7:121471800-121477000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:121472400-121475000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:121472600-121473800	Weak transcription	Brain Germinal Matrix	brain
6	chr7:121472600-121474400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:121472600-121474600	Enhancers	Fetal Brain Female	brain
8	chr7:121472800-121479000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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