Variant report

Variant	rs1014171
Chromosome Location	chr7:121444486-121444487
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1007522	0.81[JPT][hapmap]
rs1007784	0.82[JPT][hapmap]
rs10238474	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10238868	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10246475	0.81[AMR][1000 genomes]
rs10256242	0.81[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap]
rs11766572	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11766594	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11766616	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11768615	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11978007	0.86[JPT][hapmap]
rs11983105	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1206473	0.81[JPT][hapmap]
rs1206477	0.82[JPT][hapmap]
rs1206481	0.82[JPT][hapmap]
rs1206483	0.82[JPT][hapmap]
rs12111892	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12535478	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12540905	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13231796	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13243402	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1916880	0.86[JPT][hapmap]
rs1916886	0.86[JPT][hapmap]
rs1916888	0.86[JPT][hapmap]
rs1916889	0.87[JPT][hapmap]
rs2024249	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2052131	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2052132	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2052134	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2109764	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2402589	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2402590	0.81[AMR][1000 genomes]
rs3757549	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs3757550	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs4731038	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740961	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs740962	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs740963	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs740964	0.81[JPT][hapmap]
rs7797305	0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7802916	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7811200	0.84[AMR][1000 genomes]
rs960539	0.82[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121440600-121450400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:121443200-121458800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:121444000-121445600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:121444000-121447800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:121444200-121447600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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