Variant report

Variant	rs740963
Chromosome Location	chr7:121477209-121477210
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1007522	0.86[ASN][1000 genomes]
rs1014171	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10238474	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10238868	0.82[EUR][1000 genomes]
rs10246475	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10275407	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11766572	0.81[EUR][1000 genomes]
rs11766594	0.81[EUR][1000 genomes]
rs11766616	0.83[EUR][1000 genomes]
rs11768615	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11978007	0.86[ASN][1000 genomes]
rs11983105	0.82[EUR][1000 genomes]
rs12111892	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12666526	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13231796	0.89[EUR][1000 genomes]
rs13243402	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1916880	0.86[ASN][1000 genomes]
rs1916883	0.86[ASN][1000 genomes]
rs1916886	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1916887	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1916888	0.86[ASN][1000 genomes]
rs1916889	0.84[ASN][1000 genomes]
rs2024249	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2052131	0.81[EUR][1000 genomes]
rs2052132	0.81[EUR][1000 genomes]
rs2052134	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2109764	0.82[EUR][1000 genomes]
rs2191782	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2215572	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2402589	0.81[EUR][1000 genomes]
rs2402590	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3757549	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3757550	0.91[ASN][1000 genomes]
rs4731038	0.83[EUR][1000 genomes]
rs740960	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs740961	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs740962	0.80[EUR][1000 genomes]
rs7778179	0.83[ASN][1000 genomes]
rs7802916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808915	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7809971	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7811200	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960539	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121472800-121479000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:121475600-121477400	Weak transcription	Fetal Brain Male	brain
3	chr7:121476400-121479000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:121476400-121479200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:121476600-121479000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr7:121476600-121479200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:121477000-121477600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr7:121477000-121477800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr7:121477000-121477800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:121477000-121477800	Enhancers	Fetal Brain Female	brain

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