Variant report

Variant	rs12111892
Chromosome Location	chr7:121464753-121464754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1007522	0.85[JPT][hapmap]
rs1007784	0.85[JPT][hapmap]
rs1014171	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10238474	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10238868	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10246475	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10256242	0.87[ASW][hapmap];0.85[CEU][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];0.86[TSI][hapmap];0.85[YRI][hapmap]
rs10275407	0.82[AMR][1000 genomes]
rs11766572	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11766594	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11766616	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11768615	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11978007	0.90[JPT][hapmap]
rs11983105	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1206473	0.86[GIH][hapmap];0.85[JPT][hapmap]
rs1206477	0.85[JPT][hapmap]
rs1206481	0.85[JPT][hapmap]
rs1206483	0.85[JPT][hapmap]
rs12535478	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12540905	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12666526	0.83[AMR][1000 genomes]
rs13231796	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13243402	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1916880	0.90[JPT][hapmap]
rs1916886	0.84[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.87[MKK][hapmap]
rs1916888	0.82[CHD][hapmap];0.90[JPT][hapmap]
rs1916889	0.90[JPT][hapmap]
rs2024249	0.95[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.90[MKK][hapmap];0.82[TSI][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs2052131	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2052132	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2052134	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2109764	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2215572	0.82[CEU][hapmap];0.83[AMR][1000 genomes]
rs2402589	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2402590	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3757549	0.90[JPT][hapmap];0.83[AMR][1000 genomes]
rs3757550	0.95[CHD][hapmap];0.80[GIH][hapmap];0.90[JPT][hapmap]
rs4731038	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs740961	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs740962	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs740963	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs740964	0.86[CHD][hapmap];0.92[GIH][hapmap];0.85[JPT][hapmap]
rs7797305	0.85[CEU][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.86[TSI][hapmap];0.85[YRI][hapmap]
rs7802916	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7808915	0.82[AMR][1000 genomes]
rs7809971	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7811200	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs960539	0.85[JPT][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121463600-121465000	Enhancers	HepG2	liver
2	chr7:121463600-121466400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:121463800-121468800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:121463800-121469800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:121464600-121465000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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