Variant report

Variant	rs2109764
Chromosome Location	chr7:121451388-121451389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1014171	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10238474	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10238868	0.96[EUR][1000 genomes]
rs10256242	0.85[CEU][hapmap]
rs11766572	0.95[EUR][1000 genomes]
rs11766594	0.95[EUR][1000 genomes]
rs11766616	0.97[EUR][1000 genomes]
rs11768615	0.84[EUR][1000 genomes]
rs11983105	0.96[EUR][1000 genomes]
rs12111892	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12535478	0.94[EUR][1000 genomes]
rs12540905	0.88[EUR][1000 genomes]
rs13231796	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13243402	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2052131	0.95[EUR][1000 genomes]
rs2052132	0.95[EUR][1000 genomes]
rs2052134	0.97[EUR][1000 genomes]
rs2402589	0.95[EUR][1000 genomes]
rs4731038	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs740961	0.96[EUR][1000 genomes]
rs740962	0.94[EUR][1000 genomes]
rs740963	0.82[EUR][1000 genomes]
rs7797305	0.85[CEU][hapmap]
rs7802916	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121443200-121458800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:121448200-121452200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:121450000-121451600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:121450200-121451600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:121450400-121451600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:121450400-121451800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:121450400-121451800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr7:121450600-121451600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:121450600-121451800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:121450800-121451400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:121450800-121451800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:121450800-121452000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:121451000-121451600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr7:121451200-121451600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:121451200-121451600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:121451200-121451600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:121451200-121451600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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