Variant report

Variant	rs10238868
Chromosome Location	chr7:121436587-121436588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1014171	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10238474	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11766572	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11766594	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11766616	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11768615	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11983105	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111892	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12535478	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12540905	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13231796	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13243402	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2052131	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2052132	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2052134	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2109764	0.96[EUR][1000 genomes]
rs2402589	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4731038	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs740961	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740962	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs740963	0.82[EUR][1000 genomes]
rs7802916	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121433800-121442400	Enhancers	HMEC	breast
2	chr7:121434000-121440200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr7:121434000-121440200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:121435000-121436800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:121435000-121437600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr7:121435000-121438400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:121435200-121436600	Enhancers	Fetal Brain Female	brain
8	chr7:121435200-121437600	Enhancers	Brain Germinal Matrix	brain
9	chr7:121435400-121438800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:121435400-121440000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:121435600-121439800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:121435800-121436800	Enhancers	Fetal Brain Male	brain
13	chr7:121435800-121437600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:121435800-121440000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:121435800-121440400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:121436000-121436600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:121436000-121436800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:121436000-121437000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr7:121436000-121437400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:121436000-121437400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:121436000-121440200	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr7:121436000-121440800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr7:121436000-121441000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:121436200-121436600	Weak transcription	Brain Anterior Caudate	brain
25	chr7:121436200-121437000	Enhancers	Brain Hippocampus Middle	brain
26	chr7:121436200-121437200	Weak transcription	Brain Substantia Nigra	brain
27	chr7:121436200-121437600	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr7:121436200-121440600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr7:121436400-121437400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr7:121436400-121437400	Enhancers	Brain Cingulate Gyrus	brain
31	chr7:121436400-121437800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:121436400-121444000	Enhancers	NHEK	skin

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