Variant report

Variant	rs2402589
Chromosome Location	chr7:121442045-121442046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1007522	0.81[JPT][hapmap]
rs1007784	0.82[JPT][hapmap]
rs1014171	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10238474	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10238868	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10256242	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs11766572	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11766594	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11766616	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11768615	0.83[EUR][1000 genomes]
rs11978007	0.86[JPT][hapmap]
rs11983105	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1206473	0.81[JPT][hapmap]
rs1206477	0.82[JPT][hapmap]
rs1206481	0.82[JPT][hapmap]
rs1206483	0.82[JPT][hapmap]
rs12111892	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12535478	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12540905	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13231796	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13243402	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1916880	0.86[JPT][hapmap]
rs1916886	0.86[JPT][hapmap]
rs1916888	0.86[JPT][hapmap]
rs1916889	0.87[JPT][hapmap]
rs2024249	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2052131	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2052132	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2052134	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2109764	0.95[EUR][1000 genomes]
rs3757549	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs3757550	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs4731038	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs740961	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs740962	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs740963	0.81[EUR][1000 genomes]
rs740964	0.81[JPT][hapmap]
rs7797305	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7802916	0.81[EUR][1000 genomes]
rs960539	0.82[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121433800-121442400	Enhancers	HMEC	breast
2	chr7:121436400-121444000	Enhancers	NHEK	skin
3	chr7:121436600-121442200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:121439200-121444000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:121439600-121442800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:121439600-121443800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:121440000-121442600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:121440000-121442800	Weak transcription	Fetal Brain Female	brain
9	chr7:121440200-121443800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:121440600-121450400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:121441600-121442800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:121441600-121443200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:121441600-121443400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:121441800-121443200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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