Variant report

Variant	rs1916880
Chromosome Location	chr7:121543480-121543481
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1007522	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1007784	1.00[CEU][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1011693	0.83[JPT][hapmap]
rs10246475	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10256242	0.81[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap]
rs10275407	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11978007	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206473	1.00[CEU][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1206477	1.00[CEU][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1206480	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1206481	1.00[CEU][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1206482	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1206483	1.00[CEU][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes]
rs1206486	0.83[JPT][hapmap]
rs1206488	0.82[JPT][hapmap]
rs1206492	0.82[JPT][hapmap]
rs1206500	0.83[JPT][hapmap]
rs1206501	0.82[JPT][hapmap]
rs12666526	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1916883	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1916886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1916887	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1916888	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1916889	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2024249	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2191782	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2215572	0.89[CEU][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2402590	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28530500	0.84[ASN][1000 genomes]
rs3757549	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3757550	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs740960	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740963	0.86[ASN][1000 genomes]
rs740964	0.84[CEU][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs7778179	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7797305	0.81[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs7802916	0.86[ASN][1000 genomes]
rs7808915	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7809971	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7811200	0.86[ASN][1000 genomes]
rs960539	0.89[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121515600-121543600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121522600-121550000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:121523200-121552600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:121528000-121550000	Weak transcription	Brain Germinal Matrix	brain
5	chr7:121531200-121558200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:121532400-121549200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:121534800-121554200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:121537600-121545200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:121540400-121543800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:121540600-121545400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:121540800-121545200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:121541000-121552000	Weak transcription	NHEK	skin
13	chr7:121541200-121546600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:121541200-121552200	Weak transcription	Fetal Brain Female	brain
15	chr7:121541400-121549000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:121542200-121543600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:121542200-121545200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr7:121542200-121553200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:121542400-121549000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:121542600-121543600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:121543000-121544600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:121543200-121545000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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