Variant report

Variant	rs28530500
Chromosome Location	chr7:121555494-121555495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1007522	0.82[ASN][1000 genomes]
rs1011693	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1024713	0.84[EUR][1000 genomes]
rs11767822	0.83[EUR][1000 genomes]
rs1196487	0.80[ASN][1000 genomes]
rs1196490	0.80[ASN][1000 genomes]
rs11978007	0.84[ASN][1000 genomes]
rs1206486	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1206487	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1206488	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1206490	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1206492	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1206494	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1206500	0.84[EUR][1000 genomes]
rs1206501	0.84[EUR][1000 genomes]
rs1206502	0.84[EUR][1000 genomes]
rs1206504	0.84[EUR][1000 genomes]
rs1206505	0.84[EUR][1000 genomes]
rs1206507	0.83[EUR][1000 genomes]
rs1206509	0.83[EUR][1000 genomes]
rs1206514	0.82[EUR][1000 genomes]
rs1206516	0.82[EUR][1000 genomes]
rs1206517	0.82[EUR][1000 genomes]
rs12671846	0.83[EUR][1000 genomes]
rs1526314	0.82[EUR][1000 genomes]
rs1916875	0.83[EUR][1000 genomes]
rs1916880	0.84[ASN][1000 genomes]
rs1916883	0.84[ASN][1000 genomes]
rs1916886	0.83[ASN][1000 genomes]
rs1916887	0.83[ASN][1000 genomes]
rs1916888	0.82[ASN][1000 genomes]
rs1916889	0.80[ASN][1000 genomes]
rs4629793	0.83[EUR][1000 genomes]
rs4731044	0.80[ASN][1000 genomes]
rs6961716	0.80[ASN][1000 genomes]
rs6967270	0.80[ASN][1000 genomes]
rs740960	0.84[ASN][1000 genomes]
rs7794741	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121531200-121558200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:121545600-121571400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:121550600-121561400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:121551800-121555800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:121552200-121558000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:121553600-121555600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:121554200-121556400	Weak transcription	Fetal Brain Male	brain
8	chr7:121554600-121555600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:121555000-121556600	Weak transcription	Brain Anterior Caudate	brain
10	chr7:121555000-121563600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:121555200-121555600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:121555200-121557200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:121555200-121558000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:121555400-121556400	Weak transcription	Brain Germinal Matrix	brain
15	chr7:121555400-121556800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:121555400-121556800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr7:121555400-121557000	Weak transcription	Fetal Brain Female	brain
18	chr7:121555400-121557400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:121555400-121558000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:121555400-121560000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr7:121555400-121561200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr7:121555400-121565000	Weak transcription	H1 Cell Line	embryonic stem cell

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