Variant report

Variant	rs7794741
Chromosome Location	chr7:121578357-121578358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1011693	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs1024713	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11767822	0.92[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1196478	0.82[CEU][hapmap];0.83[MEX][hapmap];0.84[EUR][1000 genomes]
rs1196479	0.94[YRI][hapmap]
rs1196480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1196481	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1196483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1196484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1196486	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1196487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1196488	0.89[CEU][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1196489	1.00[YRI][hapmap]
rs1196490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1196491	0.89[CEU][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1196493	0.81[ASW][hapmap];0.85[CEU][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1196494	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1196495	0.85[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1196496	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1196511	0.86[AMR][1000 genomes]
rs1206492	0.87[CHD][hapmap];0.88[GIH][hapmap]
rs1206494	0.85[EUR][1000 genomes]
rs1206500	0.86[EUR][1000 genomes]
rs1206501	0.81[CEU][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.80[TSI][hapmap];0.86[EUR][1000 genomes]
rs1206502	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1206504	0.81[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1206505	0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1206507	0.81[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1206509	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1206514	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1206516	0.81[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1206517	0.81[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1211621	0.91[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12671846	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1526314	0.81[CEU][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1721857	0.82[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1721858	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1721859	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1916875	0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1916876	0.81[ASW][hapmap];0.89[CEU][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2024252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2690271	0.81[ASW][hapmap];0.82[CEU][hapmap];0.83[MEX][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2690272	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28530500	0.80[ASN][1000 genomes]
rs4629793	0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4731044	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967270	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs727766	0.83[AMR][1000 genomes]
rs7810556	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7794741	TAS2R16	cis	parietal	SCAN
rs7794741	KCND2	cis	cerebellum	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121571600-121597400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:121571800-121578400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:121571800-121601200	Weak transcription	Esophagus	oesophagus
4	chr7:121574000-121582400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:121574200-121581200	Weak transcription	Brain Germinal Matrix	brain
6	chr7:121575000-121579000	Weak transcription	NHEK	skin
7	chr7:121575600-121578800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr7:121575600-121581000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:121576200-121579800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:121576600-121578800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:121576600-121582800	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:121577000-121582400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:121577200-121578400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:121577400-121578400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:121577800-121578400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr7:121577800-121578400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:121577800-121578600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr7:121577800-121579000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:121577800-121579800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:121577800-121580800	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:121577800-121581000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:121578000-121578400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:121578000-121579600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr7:121578200-121578600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr7:121578200-121578600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr7:121578200-121578600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr7:121578200-121578600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr7:121578200-121579400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr7:121578200-121579600	Enhancers	Fetal Brain Female	brain

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