Variant report

Variant	rs1721859
Chromosome Location	chr7:121597108-121597109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1011693	0.86[EUR][1000 genomes]
rs1024713	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11767822	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1196478	0.86[EUR][1000 genomes]
rs1196480	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1196481	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1196483	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1196484	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1196486	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1196487	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1196488	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1196490	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1196491	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1196493	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1196494	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1196495	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1196496	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1196511	0.85[AMR][1000 genomes]
rs1206486	0.81[EUR][1000 genomes]
rs1206487	0.81[EUR][1000 genomes]
rs1206488	0.81[EUR][1000 genomes]
rs1206490	0.81[EUR][1000 genomes]
rs1206492	0.81[EUR][1000 genomes]
rs1206494	0.86[EUR][1000 genomes]
rs1206500	0.87[EUR][1000 genomes]
rs1206501	0.87[EUR][1000 genomes]
rs1206502	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1206504	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1206505	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1206507	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1206509	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1206514	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1206516	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1206517	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1211621	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12671846	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1526314	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1721857	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1721858	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1916875	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1916876	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2024252	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2690271	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2690272	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4629793	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4731044	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6961716	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6967270	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs727766	0.81[EUR][1000 genomes]
rs7794741	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7810556	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv966880	chr7:121596048-121599300	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121571600-121597400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:121571800-121601200	Weak transcription	Esophagus	oesophagus
3	chr7:121582600-121617600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:121586200-121601200	Weak transcription	Fetal Brain Female	brain
5	chr7:121591800-121597800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:121592000-121609600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:121593000-121598000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
8	chr7:121593000-121600800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:121593400-121598600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:121594200-121597200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:121594400-121599600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:121595200-121600600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:121595400-121599200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:121595400-121600000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:121595400-121600000	Weak transcription	Fetal Brain Male	brain
16	chr7:121595400-121600000	Weak transcription	NHEK	skin
17	chr7:121595400-121600800	Weak transcription	NHDF-Ad	bronchial
18	chr7:121595400-121601000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:121595400-121601200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr7:121595400-121601400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:121595600-121599200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr7:121595600-121600600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr7:121595800-121597400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:121595800-121600800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr7:121595800-121600800	Weak transcription	NH-A	brain
26	chr7:121595800-121601000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:121596000-121600800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr7:121596000-121618400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:121596600-121597800	Enhancers	H9 Cell Line	embryonic stem cell
30	chr7:121596800-121601200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links